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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00033615001 | ||||||||
Common Name | GSBRNA2T00033615001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 275aa MW: 29621.5 Da PI: 6.2287 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.9e-30 | 119 | 172 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSBRNA2T00033615001 119 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 172 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.252 | 114 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-19 | 116 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-30 | 118 | 177 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 120 | 172 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-8 | 122 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGEEVRMSDY DVSGDGDRVL EWEMGLPSDD DLTSLSYSLI PPNLAMAFSI TPEKSRTIED 60 VNRASETTFS SLRSGSSGLN TSSSNNNSTS GDGVDLSTAT AAEEGDSGTE DPTGKTLKRP 120 RLVWTPQLHK RFVDVVAHLG IKNAVPKTIM QLMNVEGLTR ENVASHLQKY RLYLKRMQGL 180 TTEGPSSSDK LFSSTPVPPQ SFQEIGGGNG SGNGQGNVSA GYHHQSHGHD PYHQNRQHHH 240 GAGGFEANPY MMQQNKFGSM ASYPPVGGRS AHEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-21 | 118 | 177 | 4 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013704864.1 | 1e-170 | PREDICTED: transcription factor LUX-like | ||||
Refseq | XP_013704941.1 | 1e-170 | PREDICTED: transcription factor LUX-like | ||||
Swissprot | Q9SNB4 | 1e-155 | PCL1_ARATH; Transcription factor LUX | ||||
TrEMBL | A0A078JB42 | 0.0 | A0A078JB42_BRANA; BnaCnng37560D protein | ||||
STRING | Bra018204.1-P | 1e-161 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4055 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.2 | 1e-127 | G2-like family protein |
Publications ? help Back to Top | |||
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